In an alternate universe, an especially large type of Pterosaur were used by the Silurians as steeds. With a forty-foot wingspan, they could easily carry a Silurian. They were used as war steeds in times of battle and would cling to the side of the airships. (PROSE: Blood Heat)
Pterodactyls were among the species placed aboard the Silurian Ark to repopulate the Earth with once the catastrophe the Silurians incorrectly predicted had passed. Flocks of Pteranodons were known to live in the Ark's beach-like environments.
According to DWBIT 7, Pterosaurs were also native to the planet Raxas, and along with the other Raxas dinosaurs, proved to be more than a match for a Dalek attack. They picked up Daleks, grabbing them between their feet, flying high into the air and dropping them to their deaths on the rocks below.
According to DWBIT 27, the Perrincott were a pterosaur-like species native to the planet Senkus Sha.