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Alternate counterparts of the Eleventh Doctor existed in other realities. These individuals shared similarities with their counterpart from the Doctor's universe, despite existing in parallel universes or alternate timelines.
Alternate timelines[]
In an alternative timeline envisioned by a continuity bomb, the Doctor allowed River to prevent his death at Lake Silencio. The two then married and settled down for a domestic life in River Song's World, where time was frozen and all of history was happening at once. Even though he could feel the universe dying, the Doctor decided not to care about it. (COMIC: Four Doctors [+]Paul Cornell, Titan summer events (Titan Comics, 2015).)
The Doctor's corpse. (TV: The Name of the Doctor [+]Steven Moffat, Doctor Who series 7 (BBC One, 2013).)
In an alternate timeline where the Time Lords never gave the Doctor more regenerations, (TV: The Time of the Doctor [+]Steven Moffat, Doctor Who Christmas Special 2013 (BBC One, 2013).) the Doctor died on Trenzalore and was buried in a giant tomb made out of his own dying TARDIS. The tomb was surrounded by a battlefield graveyard containing the fallen from the Siege of Trenzalore, with the planet itself became a desolate wasteland covered with molten cracks. (TV: The Name of the Doctor [+]Steven Moffat, Doctor Who series 7 (BBC One, 2013).)
Multi-Doctor event[]
The Doctor and his successor begin a chain of the Blinovitch Limitation Effect. (COMIC: Four Doctors [+]Paul Cornell, Titan summer events (Titan Comics, 2015).)
In the version of time where the alternate Gabby Gonzalez hailed from, the Doctor returned to the café and overheard a conversation Alice was having with Clara Oswald and Gabby Gonzalez. The Doctor broke into the conversation at exactly the same moment as his tenth incarnation, who initially did not believe he was his real successor, until a scan by his sonic screwdriver confirmed it. The Twelfth Doctor then entered the café, and broke into an argument with the Tenth Doctor, which caused a spark of the Blinovitch Limitation Effect between them, spawning the Reapers.
The Reapers singled out the Eleventh Doctor for pursuit, and he was able to lead them away while the other Doctors and companions made it to the TARDIS, which the Reapers had cut off from them. Once he met up with them, the three Doctors channelled the effect's energy through each other to restore the TARDIS. After being chased through the TARDIS, the Twelfth Doctor used the controls of the Tenth Doctor's control room to expel the Reapers and send everyone back to their own TARDIS. (COMIC: Four Doctors [+]Paul Cornell, Titan summer events (Titan Comics, 2015).)
While Clara, Alice and Gabby went elsewhere, (COMIC: The Meeting [+]Paul Cornell, Four Doctors back-up comics (Titan Comics, 2015).) the three Doctors participated in an open microphone night, (COMIC: Open Mic Night [+]Paul Cornell, Four Doctors back-up comics (Titan Comics, 2015).) for some "me time" that Clara had recommended. (COMIC: Four Doctors [+]Paul Cornell, Titan summer events (Titan Comics, 2015).) While the Eleventh Doctor tried to tell observational humour on the concept of observational humour, the Twelfth Doctor left after the audience did not take to his set up. (COMIC: Open Mic Night [+]Paul Cornell, Four Doctors back-up comics (Titan Comics, 2015).) The Doctors then tried their hand at classical comedy, though the twelfth incarnation's sense of humour turned sour, to which the tenth incarnation turned apologetic for. (COMIC: The Doctors Do... Classic Comedy [+]Paul Cornell, Four Doctors back-up comics (Titan Comics, 2015).)
Back in Paris, Clara revealed that the three Doctors had had an encounter on the planet Marinus in the circumstances of a catastrophic event. Unable to contain their curiosity, the Doctors travelled to Marinus to find out what would happen, where, after they were attacked by a mysterious beam, the Doctors began bickering and inadvertently ended up in the pose from the photo. Forced to split off into groups in a maze by their attackers, the Eleventh Doctor found himself with Clara, and, noting that she was familiar with him in particular, admitted to her that he was relieved to know he was no longer in his last incarnation.
Navigating the maze, the six met up at the middle of the maze, where a continuity bomb detonated and turned them all into time ghosts, travelling to different timelines made by the Doctors' decisions. These alternative timelines included one where the Tenth Doctor allowed Wilfred Mott to die in the radiation chamber, one where the Eleventh Doctor allowed River Song to spare him at Lake Silencio, and one where the Twelfth Doctor would become a paranoid recluse inside the TARDIS after a betrayal Clara had committed against him. In order to escape from the loop, the Doctors committed to the twelfth incarnation's future, as it seemed to be the least dangerous of the three. The alternative Twelfth Doctor was surprised to see Clara again, but recognised everyone else and agreed to give them a lift to a small pocket universe inhabited by the Voord. Upon arriving, the Voord offered the alternative Twelfth Doctor a capsule, and he revealed that he planned all of this from the start and that he was the leader of the Voord.
After the alternative Twelfth Doctor revealed how he found companionship and healing in the Voord city, and had arranged the meeting of the Doctors to ensure his timeline would be whole, he announced his intent to erase Gabby, Alice and their Doctors' memories of the event, but implant mental commands in the Twelfth Doctor and Clara's minds to ensure they would fall out in the betrayal, allowing the Twelfth Doctor to become his alternate self and lead the Voord on a universal conquest. As they were being led to have their memories altered, the Tenth Doctor tried to kill himself by jumping off a ledge in a distraction, allowing the Eleventh Doctor to deactivate the six's handcuffs. In the ensuing struggle, during which the Eleventh Doctor dropped his comics, Gabby and Alice were able to escape, with Gabby accidentally taking the Doctor's comics with her. The Doctors and Clara were then taken to the Conscience, where the alternative Twelfth Doctor altered their memories, and sent them back to their own universe to live out their new destinies.
As the alternative Twelfth Doctor gloated about his victory, Alice was killed by his Voord guards and Gabby was sent back down her own personal timeline by a Weeping Angel hidden in the Eleventh Doctor's comics package. Arriving at the café before the three Doctors appeared, Gabby warned the companions of what would occur if things went the way they had before, before fading from existence. (COMIC: Four Doctors [+]Paul Cornell, Titan summer events (Titan Comics, 2015).)
Undone events[]
Following the Dalek invasion of Medrüth, the Doctor left Valarie Lockwood and Roanna behind on Darinthia whilst he attempted his plan to connect the Pathweb to the Arkeon device alone. He failed and was captured by the Daleks, with the Eternal Dalek interrogating him on the unknown "predator of the Daleks". Unable to escape, the Doctor was contacted by Valerie via Tim's telepathic circuits. He admitted he’d failed her after she told him Roanna had been exterminated, and suggested she used Tim to go back in time to Chicago and be safe. The Doctor was taken before the Parliament of the Daleks to be exterminated. These events were undone by Valarie travelling back to their arrival on Darinthia. (AUDIO: The Last Stand of Miss Valarie Lockwood [+]Alfie Shaw, Victory of the Doctor (The Eleventh Doctor Chronicles, Big Finish Productions, 2024).)
In one outcome to the Van Baalen Bros. attacking the TARDIS with a magno-grab, the Doctor was turned into a Time zombie when exposed to the Eye of Harmony along with Clara Oswald, Gregor Van Baalen and Tricky Van Baalen, with his right hand fused to his face. (TV: Journey to the Centre of the TARDIS [+]Steve Thompson, Doctor Who series 7 (BBC One, 2013).)