Theory:Doctor Who television discontinuity and plot holes/Day of the Moon


 * Why was the Doctor captured and Amy, Rory and River hunted down? If they were working for the President, surely nobody would capture them and lock them up?


 * The Doctor put the device in Apollo 11 before he received the video of the Silent and before he even knew what it was going to say. Why would he set it up?
 * Canton was probably trying to make The Silent order their deaths. It was the plan.


 * How come The Doctor, Amy, Rory or River try to kill The Silence on sight? They must have seen the Lunar Landing.


 * Why didn't the Doctor sense that the Little Girl was a Time Lady?
 * The Doctor can't always sense a Time Lord or Lady if they are not synchronised with his time line, for example, The Master during Series 3.