Tornado

The people of Bellus created a tornado to attack a city on Demeter. The First Doctor used a tremulator to divert the energy causing it back to Bellus. (COMIC: The Ordeals of Demeter)

Professor Brian Phipps' house was destroyed by what appeared to be a freak tornado, but which turned out to be a conduit to an alien spaceship above Earth. (COMIC: The Vortex)

In 2050, the Royal Albert Hall and Hyde Park were destroyed by a tornado caused by an Aeolian. (TV: Aeolian)

When Gallifrey was shunted into a pocket universe at the end of the Last Great Time War, one of the side-effects was a tornado striking a small village. Various versions of the Doctor used their TARDISes to create a counter force that dissipated it. (PROSE: The Day of the Doctor)