Flagship

The Daleks operated Exterminator class flagships during the Second Dalek War. The Exterminator was commanded by Dalek X, the Dalek Inquisitor General. (PROSE: Prisoner of the Daleks)

The Imperial Flagship served as the personal vessel of Emperor Ludens Nimrod Kendrick Cord Longstaff XLI. (TV: Nightmare in Silver)

Cyber-Flagships were the leading vessel of a Cyber-Fleet, commanded by a Cyber-Leader. One Cyber-Flagship led the Cyber-Fleet in an attack on Nomicae in the 5320s. It was destroyed by the Harrigain. (COMIC: The Bidding War)