Jelly baby

Jelly babies were an Earth sweet favoured by the Doctor and the Master. The Doctor liked these so much, he had many bags of them stored somewhere in his TARDIS and often carried a packet with him.

Second Doctor

 * The Doctor ate jelly babies from a bag while waiting in the travel capsule. (DW: The Dominators)
 * The Doctor offered a jelly baby to the Brigadier while in the TARDIS. (DW: The Three Doctors)
 * When cornered by a Yeti and hunting through his pocket for a firework, he withdrew a bag of jelly babies. (DW: The Five Doctors)

Fourth Doctor

 * The Doctor offered Sarah Jane Smith and Harry Sullivan jelly babies. They both accepted. (DW: Robot)
 * The Doctor offered round a bag of jelly babies while aboard Space Station Nerva, shortly making an analogy to Wirrn eating up humanity, should they win. (DW: The Ark in Space)
 * The Doctor threw a bag of jelly babies to Vira as Sarah Jane, Harry and he were about to beam down to earth via the transmat. (DW: The Ark in Space)
 * After the Doctor was neutralised by the Cybermen, Kellman searched through his pockets and found a packet of jelly babies. (DW : Revenge of the Cybermen)
 * He offered one to Leela of the Sevateem tribe upon their first meeting, leading her to think he ate babies. He also bluffed the Sevateem by threatening one of the tribe with a "deadly jelly baby". (DW: The Face of Evil)
 * The Doctor pondered whether a market world sold jelly babies. (ST: Death-Dealer)
 * When emptying his pockets for Magnus Greel, one of the things the Doctor placed on the table was his bag of jelly babies. He offered one to Greel, but was refused. (DW: The Talons of Weng-Chiang)
 * The Doctor offered round a bag of jelly babies while on the sandminer; they were slapped out of his hands and he replied, saying, "A simple no thank you would have been sufficient". (DW: The Robots of Death)
 * The Doctor gave Ted Moss a jelly baby. (DW: Image of the Fendahl)
 * While investigating the Fendahl on Earth he offered "Eustace" a jelly baby in jest. (However, the sweet in question was actually a liquorice allsort, not a jelly baby.) (DW: Image of the Fendahl)
 * The Doctor used a bag of jelly babies to distract Cordo from committing suicide, long enough for him to be tackled by Leela and prevent his death. (DW: The Sun Makers)
 * While in the Correction Centre on Pluto, the Doctor offered the workers jelly babies, telling them they were in his jacket pocket. After he was freed, he left the bag with Bisham, another prisoner. (DW: The Sun Makers)
 * Upon arriving on Gallifrey the Doctor declared the Chancellery Guard were not worthy to guard a jelly baby before offering Andred one, which was declined. (DW: The Invasion of Time)
 * While on Gallifrey as Lord President, he asked Castellan Kelner to remove a jelly baby from his pocket for him. He asked it be orange, his preference. (DW: The Invasion of Time)
 * The Doctor claimed he had returned to his TARDIS to get another pack of jelly babies. He gave one to Andred and then let him have the pack. (DW: The Invasion of Time)
 * The Doctor offered Fenella Wibbsey a jelly baby, telling her to take two as they were nutritious. (AG: The Relics of Time)
 * Romana offered a bag of jelly babies around while she and the Doctor were on Zanak. (DW: The Pirate Planet)
 * The Doctor interrupted the game of rock-paper-scissors he was playing with Romana by placing a jelly baby in her hand. (DW: Destiny of the Daleks)
 * The Doctor offered a jelly baby to Davros, which was slapped out of his hand. Oddly, an explosion was heard when they fell to the ground. (DW: Destiny of the Daleks)
 * While in the Eden projection, the Doctor ate some jelly babies, and also gave a green one missing a leg to Bernice Summerfield (as she was tracking the Key to Time). (DW: Nightmare of Eden, DWM: Time & Time Again)
 * The Doctor offered some jelly babies to the Anethans aboard a Skonnan freighter and, after Romana showed them that they were fine to eat, they accepted. (DW: The Horns of Nimon)
 * The Iron Legion invaded a British town in which the Doctor happened to be at a shop, stocking up on jelly babies. (DWM: The Iron Legion)

Fifth Doctor

 * The Doctor gave some Tibetan sherpas a bag of jelly babies in exchange for the use of their yaks and cart to move his TARDIS. (BFA: The Roof of the World)

Sixth Doctor

 * In a confused condition brought on by attacks upon his second incarnation, the Doctor made random references to his previous lives and "the tensile strength of jelly babies". (DW: The Two Doctors)
 * On Ravolox, Drathro's minions, Humker and Tandrell, discovered a bag of jelly babies in the Doctor's coat as they frisked him. He quickly snatched the bag back, before wordlessly offering them each one of the sweets. (DW: The Mysterious Planet)

Seventh Doctor

 * The Doctor enjoyed a snack of jelly babies while reading The Time Machine, just before the events that led to his regeneration, making it his last meal. (DW: Doctor Who)
 * After appearing to die in a San Francisco hospital, his belongings ended up in the possession of a youth named Chang Lee. Amongst those possessions was a bag of jelly babies. (DW: Doctor Who)

Eighth Doctor

 * The Eighth Doctor produced a bag of jelly babies to distract a police officer, and then disarmed him. (DW: Doctor Who)
 * He used a jelly baby to confuse a security guard named Gareth at the Institute of Technological Advancement and Research (DW: Doctor Who)
 * The Eighth Doctor also searched for jelly babies in the markets of Hyspero. (EDA: The Scarlet Empress)
 * Whilst living on Earth in the town on Greyfrith, he often bought jelly babies by the pound. (EDA: Father Time)
 * Fitz once told a tale of when the Doctor went missing for days, having gone searching for the "perfect jelly baby". (EDA: The City of the Dead)

Tenth Doctor

 * The Doctor gave Donna Noble a bag to breathe into when she began hyperventilating; she commented that it smelled of jelly babies. (NSA: The Forever Trap)
 * When shopping for some 'Brainy Crisps' to conduct an investigation, the Doctor was able to ignore a lot of the sweets but gave the jelly babies a longing glance. (QR: Code of the Krillitanes)

Eleventh Doctor

 * While trying to stabilize into his namesakes form and personality, a Ganger duplicate of the Doctor rapidly fluctuated through the earlier incarnations and asked the real Doctor if he would like a jelly baby, in the voice of the Fourth Doctor while holding out his hand as if holding a bag of them. He then mixed the sentences together and said, "Reverse the jelly baby of the neutron flow". (DW: The Almost People)

Other

 * Bernice Summerfield went to find a segment of the Key to Time, disguised as a jelly baby, which the Fourth Doctor happened to have. To this end, she met him while fending off Mandrels in the section of Eden take by the Continuous Event Transmuter. (DWM: Time & Time Again during the events of DW: Nightmare of Eden)
 * Harold Saxon enjoyed a bag of jelly babies with his wife while waiting for the Toclafane invasion. (DW: The Sound of Drums)
 * Jelly babies appear as collectible cards in The Adventure Games.

Behind the scenes

 * On a number of occasions, the Doctor offered "jelly babies" when in fact he was holding another kind of sweet, such as liquorice allsorts, for example in DW: The Sun Makers and Image of the Fendahl.
 * Tom Baker has claimed that the original script of The Face of Evil involved the Doctor threatening the tribesmen with a knife. Feeling that such an act was not appropriate, he insisted that the Doctor bluff his way out with a jelly baby instead.
 * In the United States, jelly babies had a low profile as a confectionery product. When Pinnacle Books published Doctor Who novelisations in new packaging, the editorial changes made by them included changing jelly babies to jelly beans, for fear of confusing American readers. Later, when the series had a great deal more popularity, many Americans simply associated jelly babies with Doctor Who and with the Doctor as played by Tom Baker. Under license from the BBC, one company sold jelly babies in packaging resembling the Doctor's TARDIS, advertising them as "the Cosmic Candy of the Time Lords".
 * The "Inside the TARDIS" featurette on the UK DVD of Doctor Who includes a closeup view of the bowl of jelly babies enjoyed by the Seventh Doctor at the start of the film.