Armageddon Sapphire universe

Close to the end of the Sixth Doctor's life, the Quantum Archangel created a parallel universe wherein the Doctor was never exiled to Earth by the Time Lords. Here the War began when the Sixth Doctor convinced his people to abandon the non-interference policy to launch a jihad against the Enemy. In this reality, the Enemy were an old foe of the Doctor who used flying saucers, had metallic voices and "tin minds", and knew the Doctor by the name "Ka Faraq Gatri".

The Time Lords created a series of time dreadnoughts armed with Time Destructors: Sacred Might of Gallifrey, Righteous Fist of Rassilon, Glorious Aspect of Omega, Arcane Mystery of the Other, and Blind Visage of Pythia. Thousands of War TARDISes were put into use. Many renegade Time Lords returned to aid in the War; and Morbius were put in charge of military units and Mortimus became an elite executive of the CIA.

The War quickly spread across the universe, with the Time Lords becoming greatly allied with the Cyberlords. The Time Lords' superior temporal technology initially allowed them a string of victories against the Enemy. Success seemingly assured, the Doctor left the frontline to hold the rank of Lord President on Gallifrey. The Master then defected to the Enemy's side, turning the tides of the War by providing them with Gallifreyan technology.

Now technologically equal, the Enemy's vastly superior numbers allowed them to quickly become the winning side of the War. After Andred was killed in battle with Enemy forces, Lord President Admiral Doctor decided to destroy the universe using the Armageddon Sapphire before the Enemy could win the War. (PROSE: The Quantum Archangel)