Eleventh Doctor comic stories

 ran in several regularly-published titles: Doctor Who Magazine, Doctor Who Adventures, the American Doctor Who (2011) & Doctor Who (2012), and Doctor Who: The Eleventh Doctor. All of these comic strip adventures were supported by appearances in the Doctor Who annuals and Doctor Who Storybooks. The Eleventh Doctor also had the honour of featuring in two original graphic novels, The Only Good Dalek and The Dalek Project — something which hadn't happened since the Sixth Doctor appeared in The Age of Chaos.

Though this multi-titled existence was something the Eleventh Doctor inherited from the Tenth Doctor, he was the first incarnation of the Doctor to start out in comic strips in at least two simultaneous monthly publications. He was also the first incarnation of the Doctor to debut in a comic strip other than the one in Doctor Who Magazine since the Eighth Doctor premiered in Radio Times. Doctor Who Adventures published its first Eleventh Doctor story several weeks before DWM launched its series.

Regular

 * Amy Pond (Doctor Who Magazine, Doctor Who Adventures, Doctor Who (2011), and Doctor Who (2012))
 * Rory Williams (Doctor Who Magazine, Doctor Who Adventures, Doctor Who (2011), and Doctor Who (2012))
 * Decky Flamboon (Doctor Who Adventures)
 * Clara Oswald (Doctor Who Magazine, Doctor Who Adventures, Doctor Who (2012))
 * Alice Obiefune (Doctor Who: The Eleventh Doctor)
 * John Jones (Doctor Who: The Eleventh Doctor)
 * ARC (Doctor Who: The Eleventh Doctor)
 * The Squire (Doctor Who: The Eleventh Doctor)
 * Abslom Daak (Doctor Who: The Eleventh Doctor)
 * River (Doctor Who: The Eleventh Doctor)
 * The Sapling (Doctor Who: The Eleventh Doctor)

Minor

 * Kevin (Doctor Who (2011))

One-off

 * Ian Chesterton and Barbara Wright (Doctor Who Magazine)
 * Ally (Doctor Who Special 2013)

Doctor Who Magazine

 * Travelling with Amy Pond


 * Supernature (DWM 421-423)
 * Planet Bollywood (DWM 424)
 * The Golden Ones (DWM 425-428)
 * The Professor, the Queen and the Bookshop (DWM 429)
 * The Screams of Death (DWM 430-431)
 * Do Not Go Gentle Into That Good Night (DWM 432)
 * Forever Dreaming (DWM 433-434)
 * Apotheosis (DWM 435-437)
 * The Child of Time (DWM 438-441)
 * Travelling with Amy Pond and Rory Williams


 * The Chains of Olympus (DWM 442-445)
 * Sticks & Stones (DWM 446-447)
 * The Cornucopia Caper (DWM 448-450)
 * The Broken Man (DWM 451-454)
 * Without the Doctor


 * Imaginary Enemies (DWM 455 featuring Mels, Amy Pond and Rory Williams)
 * With Ian Chesterton and Barbara Wright


 * Hunters of the Burning Stone (DWM 456-461)
 * Travelling with Clara Oswald


 * A Wing and a Prayer (DWM 462-464 featuring Amy Johnson)
 * Welcome to Tickle Town (DWM 465-466)
 * John Smith and the Common Men (DWM 467)
 * Pay the Piper (DWM 468-469 featuring Amy Johnson)
 * The Blood of Azrael (DWM 470-474)
 * Without the Doctor


 * The Crystal Throne (DWM 475-476 featuring Vastra, Jenny Flint and Strax)

Doctor Who Adventures

 * Travelling with Amy Pond


 * Attack of the Space Leeches! (DWA 160-161)
 * Madness on the M1! (DWA 162)
 * Winning Hand (DWA 163)
 * Booked Up (DWA 164)
 * Bad Vibrations (DWA 165)
 * About Face (DWA 166)
 * Track Attack (DWA 167)
 * Nowhere Man (DWA 168)
 * Money Troubles (DWA 169)
 * Fashion Victims (DWA 170)
 * The Collector (DWA 171)
 * The Stray (DWA 172)
 * Mistaken Identity (DWA 173)
 * Foul Play (DWA 174)
 * Attack of the GateBots! (DWA 175)
 * Blue Skies Thinking (DWA 176)
 * Samurai's Secret (DWA 177)
 * A Mess of Trouble (DWA 178)
 * In the Stars (DWA 179)
 * Most Haunted (DWA 180)
 * The Living Storm (DWA 181)
 * The Scarecrow (DWA 182)
 * Sky Scraper (DWA 183)
 * The Purrfect Crime (DWA 184)
 * The Steel Web (DWA 185)
 * In the Can (DWA 186)
 * Snow Globe (DWA 187)
 * Wave Machine (DWA 188)
 * Cell Shock (DWA 189)
 * The Trick (DWA 190)
 * The Lunar Tyk (DWA 191)
 * Pencil Pusher (DWA 192)
 * The Cleverest King (DWA 193)
 * Seeing Things (DWA 194)
 * Pirates of the Seven Seeds (DWA 195)
 * Rough Waters (DWA 196)
 * Red Christmas (DWA 197)
 * Travelling with Amy Pond and Rory Williams


 * First Foot First (DWA 198)
 * Random History (DWA 199)
 * The Salt Solution (DWA 200)
 * Rory's Story (DWA 201)
 * Sub-species (DWA 202)
 * Quite Interesting (DWA 203)
 * Earworm (DWA 204)
 * If You Go Down to the Woods Today (DWA 205)
 * Ghost World (DWA 206)
 * Power of the Mykuootni (DWA 207)
 * Mine, All Mine! (DWA 208)
 * Golden Slumbers (DWA 209)
 * Sound Bytes (DWA 210)
 * Chasing Rainbows (DWA 211)
 * Pier Head From Space (DWA 212)
 * The Evergreen Death (DWA 213)
 * The Rage (DWA 214)
 * The Peace Strike (DWA 215)
 * Extinction Event (DWA 216)
 * Hot Stuff! (DWA 217)
 * The Very Cool Bow Tie! (DWA 218)
 * Reality Cheque (DWA 219)
 * Road Rage (DWA 220)
 * The King and the Tripeberry (DWA 221)
 * Danger Flight (DWA 222)
 * Dinosaurs in New York! (DWA 223)
 * Screamers! (DWA 224)
 * Grow Your Own (DWA 225)
 * The Golesterkol Collection (DWA 226)
 * Missing in Action (DWA 227)
 * Peril on the Sea (DWA 228)
 * Rock Quasar and the Mudslugs of Gurrn (DWA 229)
 * Dino World (DWA 230)
 * The Upper Deck (DWA 231)
 * The Moon of Lost Hope (DWA 232)
 * Vacuum Packed (DWA 233)
 * Funny Phone Call! (DWA 234)
 * The Deadly Mutant (DWA 235)
 * The Mutant Turnip (DWA 236)
 * The Secret Star Trail (DWA 237)
 * Agent 99 (DWA 238)
 * Dimension Warp (DWA 239)
 * The Kchrusivour Gambit (DWA 240)
 * Trapped in the Pages of History (DWA 241)
 * Dawn of the Living Bread (DWA 242)
 * Air Force Gone (DWA 243)
 * The Frankenstein Particle (DWA 244)
 * Dog of War! (DWA 245)
 * Harvest of Doom (DWA 246)
 * The Atomon Invasion (DWA 247)
 * Wait Until Morning (DWA 248)
 * Humans Aren't Just for Christmas (DWA 249)
 * Vengeance of the Atomon (DWA 250-251)
 * Picture Imperfect (DWA 252)
 * The Star Serpent (DWA 253)
 * The Home Store (DWA 254)
 * Cold Comfort (DWA 255)
 * Faster Than Light (DWA 256)
 * The Fairest of Them All (DWA 257)
 * New and Improved (DWA 258)
 * Malthill Way (DWA 259)
 * The Demons of Repton Abbey (DWA 260)
 * The Punch & Judy Trap (DWA 261)
 * Buy, Buy, Baby! (DWA 262)
 * Ghosts of the Never-were (DWA 263)
 * The Parasites (DWA 264)
 * Doomland (DWA 265)
 * Buying Time (DWA 266)
 * Island of the Cyclopes (DWA 267)
 * Trouble on the Orion Express (DWA 268)
 * Dummy Run (DWA 269)
 * Finders Keepers (DWA 270)
 * The Mirror War (DWA 271)
 * Ghost Train (DWA 272)
 * I Scream (DWA 273)
 * Le Tour de Death (DWA 274)
 * The Sky is Falling! (DWA 275)
 * The Time Gallery (DWA 276)
 * The Cliff Face (DWA 277)
 *  Bumble of Destruction (DWA 278)
 * The Light Catcher (DWA 279)
 * Dungeon of the Lost (DWA 280)
 * The Intergalactic Trials (DWA 281)
 * 24-Hour News Invasion (82)
 * The Panic Room (DWA 283)
 * Terror from the Swamp (DWA 284)
 * The Planet That Slept (DWA 285)
 * Planet of the Rorys (DWA 286)
 * Dawn of Time! (DWA 287)
 * TV Hell! (DWA 288)
 * Pondnium! (DWA 289)
 * Travelling alone


 * Bite of the Morphuse! (DWA 290)
 * Garbage Day! (DWA 291)
 * The Greedy Gulper (DWA 292)
 * Travelling with Decky Flamboon


 * Meteorite Meeting (DWA 293)
 * Tower of Power (DWA 294)
 * The Shark Shocker (DWA 295)
 * The Toybox (DWA 296)
 * The Runaway Bogey (DWA 297)
 * On the Cards (DWA 298)
 * Decky the Halls (DWA 299)
 * Snowball! (DWA 300)
 * Museum Piece (DWA 301)
 * All Change! (DWA 302)
 * An Ill Wind (DWA 303)
 * The Water World (DWA 304)
 * Pet Panic (DWA 305)
 * Space Race (DWA 306)
 * Love is in the Air (DWA 307)
 * Toothache! (DWA 308)
 * Terror in the Taj Mahal (DWA 309)
 * Eye Spy (DWA 310)
 * Colossus of the Colosseum (DWA 311)
 * The Tail of Decky Flamboon (DWA 312)
 * Travelling alone


 * The Egg Hunt (DWA 313)
 * Travelling with Clara Oswald


 * The Mystery of the Mould (DWA 314)
 * The Planet That Went Backwards (DWA 315)
 * Teacher's Pet (DWA 316)
 * Coral Maze (DWA 317)
 * Sandblasted (DWA 318)
 * Tunnel Terrors! (DWA 319)
 * Nova (DWA 320)
 * Line of Battle (DWA 321)
 * The Curse of the Gibwyn (DWA 322)
 * Gumfight (DWA 323)
 * The Hat Trick (2DWA 34)
 * Gnome Guard (DWA 325)
 * Strictly Fight Monsters (DWA 326)
 * Planet Void (DWA 327)
 * Reprogramme (DWA 328)
 * Shipwrecked (DWA 329)
 * Eye of the Storm (DWA 330)
 * Whale Tale (DWA 331)
 * Faceache (DWA 332)
 * Time Trick (DWA 333)
 * Dragon Attack (DWA 334)
 * The Holly and the Ivy (DWA 335)
 * By the Book (DWA 336)
 * Creatures from the Deep (DWA 337)
 * Invaders of the Vortex (DWA 338)
 * A Tangled Web (DWA 339)
 * Ball-Pit Beast (DWA 340)
 * T-Shirt Terror (DWA 341)
 * Fans (DWA 342)
 * Universally Known (DWA 343)
 * Thrill-Seeker (DWA 344)
 * Wintervention (DWA 345)
 * A Long Way Down (DWA 346)
 * The Killer Weed (DWA 347)
 * Eternity Springs (DWA 348)
 * Robot vs Robot (DWA 349)
 * Jungle Jam (DWA 350)
 * Swarm (DWA 351)

Doctor Who (2011)

 * Travelling with Amy Pond and Rory Williams


 * Spam Filtered (DW11 1)
 * Ripper's Curse (DW11 2-4)
 * They Think It's All Over (DW11 5)
 * When Worlds Collide (DW11 6-8 featuring Kevin)
 * Space Squid (DW11 9 featuring Kevin)
 * Body Snatched (DW11 10-11)
 * Travelling alone


 * Silent Knight (DW11 12)
 * Travelling with Amy Pond and Rory Williams


 * As Time Goes By (DW11 13-16)

Doctor Who (2012)

 * Travelling with Amy Pond and Rory Williams


 * Hypothetical Gentleman (DW12 1-2)
 * The Doctor and the Nurse (DW12 3-4)
 * The Eye of Ashaya (DW12 5-6)
 * Travelling alone


 * Space Oddity (DW12 7-8)
 * Travelling with Clara Oswald


 * Sky Jacks (DW12 9-12)
 * Dead Man's Hand (DW12 13-16 featuring Matrix projections of the first eleven Doctors and the War Doctor)

Prisoners of Time

 * The Choice (POT 11 featuring Clara Oswald)
 * Endgame (POT 12 featuring Amy Pond, Rory Williams and Clara Oswald, the first eleven Doctors (save the War Doctor), and numerous other companions)

Miniseries

 * A Fairytale Life (AFL 1-4)
 * Assimilation² (STTNGDWA 1-8)

IDW annuals and specials

 * To Sleep, Perchance to Scream (Doctor Who Annual 2010 featuring multiple Doctors in the Tenth Doctor's dream)
 * Tuesday (Doctor Who Annual 2011 featuring Amy Pond and Rory Williams)
 * Your Destiny Awaits (Doctor Who Annual 2011 featuring Amy Pond, Rory Williams and Kevin)
 * Run, Doctor, Run (Doctor Who Annual 2011)
 * Down to Earth (Doctor Who Annual 2011)
 * In-Fez-Station (Doctor Who Annual 2012 featuring Amy Pond and Rory Williams)
 * Time Fraud (Doctor Who Annual 2012 featuring Amy Pond and Rory Williams)
 * Escape into Alcatraz (Doctor Who Annual 2012)
 * The Eagle of the Reich (Doctor Who Annual 2012 featuring Amy Pond and Rory Williams)
 * The Birthday Boy (Blu-ray special featuring Clara Oswald and various past companions in the Doctor's mind)
 * The Girl Who Loved Doctor Who (Doctor Who Special 2013 featuring Ally)

Doctor Who: The Eleventh Doctor

 * Travelling with Alice Obiefune


 * After Life (11D 1)
 * The Friendly Place (11D 2)
 * Travelling with Alice Obiefune and John Jones


 * What He Wants... (11D 3)
 * Whodunnit / The Sound of Our Voices (11D 4-5)
 * Travelling with Alice Obiefune, John Jones and ARC


 * Space in Dimension Relative and Time (11D 6)
 * The Eternal Dogfight / The Infinite Astronaut (11D 7-8)
 * The Rise and Fall / The Other Doctor (11D 9-10)
 * Four Dimensions (11D 11)
 * Conversion (11D 12-13)
 * The Comfort of the Good (11D 14-15)
 * Travelling with Alice Obiefune, The Squire and Abslom Daak


 * The Then and the Now (11DY2 1-2)


 * Pull to Open (11DY2 3)
 * Outrun (11DY2 4)
 * The Judas Goatee (11DY2 5)
 * Travelling with Alice Obiefune, The Squire, Abslom Daak and River


 * The One (11DY2 6-7)
 * Downtime (11DY2 8)
 * Running to Stay Still (11DY2 9)
 * First Rule (11DY2 10)
 * Fast Asleep (11DY2 13)
 * Gently Pulls the Strings (11DY2 14)
 * Physician, Heal Thyself (11DY2 15)
 * Travelling with Alice Obiefune and The Sapling


 * Remembrance (11DY3 1)
 * The Scream (11DY3 2 featuring John Jones)
 * The Tragical History Tour (11DY3 3-4)
 * Time of the Ood (11DY3 5)
 * The Memory Feast (11DY3 6-7)
 * Fooled (11DY3 8)
 * Strange Loops (11DY3 9, 11)

Back-up strips

 * Pond Life (11D 1 featuring Amy Pond, Rory Williams and River Song)
 * Unexpected Enemy in Bagging Area (11D 2 featuring Amy)
 * Sonic Sleuth (11D 3 featuring Amy)
 * Wholloween (11D 4 featuring Amy)
 * An Ood Thing to Say (11D 5 featuring Amy and Rory)
 * Bus Replacement TARDIS (11D 6 featuring Amy and Rory)
 * An Adventure in Brine and Plaice (11D 7 featuring River and Rory)
 * Short-Change (11D 8 featuring Amy)
 * Double Date (11D 9 featuring Amy, Rory and River)
 * Time Gentlemen, Please! (11D 11 featuring Amy, Rory and Strax)
 * Bow-ties for Goal Posts (11D 12 featuring Rory)
 * Summer Wholiday (11D 13 featuring Amy, Rory and River)
 * Timeliney Wimey (11D 14 featuring River)
 * Take a Bow (Tie) (11D 15 featuring River)
 * New Year, New Who (11DY2 1 featuring Amy, Rory and River)
 * No Win, No Fez (11DY2 2 featuring Amy, Rory and River)
 *  Gunpowder, Time Lord and Plot (11DY2 3 featuring Amy and Rory)
 * Who Who Who, Merry Christmas (11DY2 4 featuring Amy, Rory and River)
 * Time Spill on Aisle 5 (11DY2 5)
 * Love Thy Neighbor (11DY2 6 featuring Rory and Strax)
 * Something Borrowed (11DY3 7 featuring Alice Obiefune)

Miniseries

 * Four Doctors (FD 1-5 featuring Alice Obiefune)
 * Supremacy of the Cybermen (SOTC 1-5 featuring Alice Obiefune)
 * The Lost Dimension (TLD 1, 4, 8 featuring Alice Obiefune)

Free Comic Book Day

 * Give Free or Die (Free Comic Book Day 2015 featuring Alice Obiefune, John Jones and ARC)
 * Obsessions (Free Comic Book Day 2016 featuring Alice Obiefune and Abslom Daak)
 * The Promise (Free Comic Book Day 2017 featuring Alice Obiefune and The Sapling)

San Diego Comic Con

 * The Long Con (2016 Convention Special featuring Alice Obiefune)

Doctor Who annuals

 * Buzz! (2011 featuring Amy Pond and Rory Williams)
 * The Grey Hole (2011 featuring Amy Pond)


 * The House of Lights (2012 featuring Amy Pond and Rory Williams)
 * Attack of the 50ft Rory (2012 featuring Amy Pond and Rory Williams)
 * The Zentrabot Invasion (2013 featuring Danny)
 * The Tomb of Shemura (2013 featuring Danny)
 * The Door to a Winter Long Ago (50th Anniversary featuring Clara Oswald)
 * Night Light (50th Anniversary featuring Clara Oswald)

Original graphic novels

 * The Only Good Dalek (featuring Amy Pond)
 * The Dalek Project